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Besides this tutorial, snoDB internally links to the following:
Description of the updates applied as well as copies of previous files for each version.
Textual explanation of the site's components with references and contact information.
Graphical representations of some of the data found in snoDB.
Page illustrating the RNA-Seq pipeline used to obtain the abundance data.
rRNA Chemical Modifications:
Whole interactive section on rRNA modified sites, containing
graphical rRNA representation, conversion table between different
rRNA versions, and finaly, graphs representing rRNA modication levels
(2'-O-methylation or pseudouridylation), per position, on rRNAs.
Simple tool that completes a gtf file (Ensembl or RefSeq) with snoRNAs present in snoDB
and missing in a provided annotation.
Sequence Search Tool:
Sequence similarity search (developped by
) that enables
the comparison of any query sequence against a comprehensive collection
Clicking on snoDB ID links to individual pages for each entry.
snoDB Links to the Following Resources:
snoRNABase snOPY snoRNA Atlas
RNAcentral Ensembl RefSeq NCBI HGNC Rfam
RISE DATABASECurated Articles
Main Search: Search 1 or More snoRNA Symbols
Global Search: Matches strings across entire table